5. Liu, Y.; Karmakar, R.; Billini, M.; Steinchen, W.; Mukherjee, S.; Hernández-Tamayo, R.; Heimerl T.; Bange, G.; Schäfer, L. V.; Thanbichler, M. Membrane binding properties of the cytoskeletal protein bactofilin. eLife (Reviewed preprint) 2025. DOI: 10.7554/eLife.100749.2

4. Yang, T-J.; Mukherjee, S.; Langer, J. D., Hummer, G.; McDowell, M. SND3 is the membrane insertase within a fungal multipass translocon.  BioRxiv 2025. DOI: 10.1101/2025.07.08.663624

3. Mondal, S.; Mukherjee, S.; Namitz, K.E.W.; Yennawar,  N.; Boehr, D.D. Interactions between the picornavirus 3C(D) main protease and RNA induce liquid-liquid phase separation. BioRxiv 2025. DOI: 10.1101/2025.04.14.648818.

2. Mukherjee, S. BEER: Biochemical Estimator and Explorer of Residues -- A Comprehensive Software Suite for Protein Sequence Analysis. arXiv 2025. DOI: 10.48550/arXiv.2504.20561.

1. Mukherjee, S.; Mondal, S.; Bagchi, B. Dynamical Theory and Cellular Automata Simulations of Pandemic Spread: Understanding Different Temporal Patterns of Infections. arXiv 2020. DOI: 10.48550/arXiv.2004.14787.