Softwares and Programs
Embedded Files
BEER (Biophysical Evaluation Engine for Residues)
BEER is a desktop application for integrated biophysical analysis of protein sequences. It accepts a sequence (pasted, imported as FASTA/PDB, or fetched from UniProt/RCSB), runs 14 classical analysis sections and 24 ESMC BiLSTM neural AI prediction heads on demand, and gives you interactive publication-quality graphs, a 3D structure viewer, and exportable per-section reports — all from a single GUI.
GitHub: https://github.com/chemgame/BEER
BRMSD (Bayes-optimal RMSD)
BRMSD implements a Bayesian framework for structure-based analysis of MD trajectories. Unlike standard RMSD, which weights all atoms equally, BRMSD simultaneously optimises per-atom weights and structural quantities (average structure, cluster centers, smoothed frames) so that rigid, well-aligned atoms automatically receive high weight and flexible or disordered regions are down-weighted. The result is a self-consistent, Bayes-optimal description of structural variability.
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